R Archives

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data

David Butler
October 4, 2021

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data: Guidelines for Developing Machine Learning Models Hossein Sharifi Noghabi1, Petr Smirnov2, Soheil Jahangiri-Tazehkand2, Anthony Mammoliti2, Sisira Kadambat Nair3, Casey Hon2, Arvind Mehr3,

Cancer Cell Biology, Capsule, Genomics, Pharmacogenomics, R, Ubuntu

RStudio and Code Ocean – Better Together

Ben Xu
September 7, 2021

Creating an Essential Research Collaboration Environment with R Studio Today’s high-throughput biomedical research techniques and intensive interdisciplinary collaborations – especially between biologists and computational researchers – require tools and infrastructure

Collaboration, R, RStudio, Tooling

One Experience for Sharing, Two Ways to Deliver Interactive Analysis

Ben Xu
September 6, 2021

Code Ocean App Panels and Shiny Apps The interdisciplinary nature of computational biology demands rapid, reliable sharing of analyses to enable collaborative, reproducible research between individuals and teams. Increasingly, conventional

App Panel, R, RStudio, Shiny, Tooling

Cancer Pharmacogenomic Toolbox – CCLE Capsule

Xu Fei
July 12, 2021

Cancer Pharmacogenomic Toolbox – CCLE Capsule Author(s): Benjamin Haibe-Kains, University Health Network View Capsule Read publication Environment R Studio Shiny-server Ubuntu Packages: Bioconductor PharmacoGx Code R Data The Cancer Cell

Cancer Cell Biology, Capsule, CCLE, Gene Signature, Multi-Omics, Pharmacogenomics, R, Ubuntu

MetaGxData V2: Cancer Datasets Generate Multi-Cancer Signature Capsule

Xu Fei
May 25, 2021

MetaGXData V2: Cancer Datasets Gen Multi-Cancer Gene Signature Capsule Author(s): Benjamin Haibe-Kains, University Health Network Michael Zon, McMaster University Deena Gendoo, University of Birmingham View Capsule Read publication Environment R

App Panel, Cancer Cell Biology, Capsule, Gene Signature, MetaGxData, R, Ubuntu

Combo Synergy of Two Drugs Capsule

Xu Fei
May 14, 2021

Combo Synergy of Two Drugs Capsule Author(s): Jennifer O’Neil, Yair Benita, Igor Feldman, Melissa Chenard, Brian Roberts, Yaping Liu, Jing Li, Astrid Kral, Serguei Lejnine, Andrey Loboda, William Arthur, Razvan

App Panel, Cancer Cell Biology, Capsule, Debian, R, Synergistic Drug Combination

Differential Analyses for RNA-seq Capsule

Xu Fei
March 30, 2021

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences Author(s): Charlotte Soneson Institute for Molecular Life Sciences, University of Zurich, Zurich, 8057, Switzerland; SIB Swiss Institute of Bioinformatics, University of

Capsule, R, RNA-sequencing

RNA-seq Capsule

Xu Fei
March 19, 2021

RNA-Seq workflow: gene-level exploratory analysis and differential expression Author(s): Mike Love Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Department of Biostatistics, Harvard TH Chan School of Public

Capsule, R, RNA-sequencing

Tag: R

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data

RStudio and Code Ocean – Better Together

One Experience for Sharing, Two Ways to Deliver Interactive Analysis

Cancer Pharmacogenomic Toolbox – CCLE Capsule

MetaGxData V2: Cancer Datasets Generate Multi-Cancer Signature Capsule

Combo Synergy of Two Drugs Capsule

Differential Analyses for RNA-seq Capsule

RNA-seq Capsule

Get started with Code Ocean

Product

Resources

Solution

About

Contact Us

Preservation plan

FAQ

Capsule Directory