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Lineage Light@8x

Lineage Graph

An immutable record of how Result Data is generated within Code Ocean, showing source data, processing steps through Capsules and Pipelines, and Result Data output.

Key capabilities

How the Lineage Graph works with the rest of the Code Ocean platform

Capsules Colour@8x Track computational work done in Compute Capsules

Compute Capsules record all computational work performed within them. Results generated are automatically recorded, along with the input Data used to create them.

Capsules
CapsulesGB
Pipeline Colour@8x Track the output of bioinformatics pipelines

Pipelines can incorporate output from multiple different Compute Capsules, Data sources, and other Pipelines. This is all tracked by the Lineage Graph.

Pipelines
Pipelines
Data Colour@8x Track source data used in the generation of results

Code Ocean tracks all Data used in computational work. Data and Results can be accessed through the Data dashboard, allowing you to keep track of what data was used where and when.

Data
Data

Built for bioinformatics

  • Data analysis

    data-analysis

    Data analysis

    Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

  • Data management

    data-management

    Data management

    Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

  • Bioinformatics pipelines

    bioinformatic-pipelines

    Bioinformatics pipelines

    Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

  • AI & Machine Learning

    AI-MLflow

    AI & Machine Learning

    Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

  • Multiomics

    multiomics

    Multiomics

    Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

  • Image processing

    image-processing

    Image processing

    Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

  • Cloud management

    cloud-management

    Cloud management

    Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. 

  • Result provenance

    result-provenance

    Result provenance

    Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

data-analysis

Data analysis

Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

data-management

Data management

Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

bioinformatic-pipelines

Bioinformatics pipelines

Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

AI-MLflow

AI & Machine Learning

Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

multiomics

Multiomics

Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

image-processing

Image processing

Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

cloud-management

Cloud management

Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. 

result-provenance

Result provenance

Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

Join thousands of other Computational Scientists using Code Ocean