MetaGXData V2: Cancer Datasets Gen Multi-Cancer Gene Signature Capsule
Author(s): Benjamin Haibe-Kains, University Health Network Michael Zon, McMaster University Deena Gendoo, University of Birmingham
Environment
R
Ubuntu
Packages:
r-base-dev
Code
R
Data
86 datasets and encompassing 15,249 samples, incl:
-Breast cancer: 39 microarray datasets from a variety of commercially available microarray platforms
-Ovarian cancer: 26 microarray datasets spanning 3,526 samples
-Pancreatic cancer: 21 datasets with a total of 1,719 patient transcriptomic profiles
Results
What's inside
MetaGxData package compendium, which includes manually-curated and standardized clinical, pathological, survival, and treatment metadata across breast, ovarian, and pancreatic cancer data.
Who uses it
Cancer researchers interested in using transcriptomic and clinical data in a variety of cross-tumor analyses, e.g. identification of common biomarkers, and assessing the validity of prognostic signatures.
Why we like this
MetaGxData is the largest compendium of curated transcriptomic data for breast, ovarian, and pancreatic cancer to date.
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For any questions about the Compute Capsule, please contact us at [email protected].
