Cancer Pharmacogenomic Toolbox - CCLE Capsule
Author(s): Benjamin Haibe-Kains, University Health Network
Environment
R Studio
Shiny-server
Ubuntu
Packages:
Bioconductor
PharmacoGx
Code
R
Data
The Cancer Cell Line Encyclopedia contains a compilation of gene expression, chromosomal copy number, and massively parallel sequencing data from 1457 human cancer cell lines (as of 6/25/21)
Results
What's inside
This capsule showcases how users can use the PharmacoGx R/Bioconductor package to explore the Cancer Cell Line Encyclopedia (CCLE) dataset
Who uses it
Cancer researchers with focus on pharmacogenomics
Why we like this
Easy to use and interactive capsule that allows users without coding experience to explore the CCLE dataset which is made available in the Capsule.
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For any questions about the Compute Capsule, please contact us at [email protected].
