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Computational science platform

Collaborative, reproducible bioinformatics for R&D

Set up environments, provision compute, run pipelines, and manage ML models. Traceable, compliant, reproducible, and installs into your existing cloud architecture.

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Trusted by thousands of computational scientists in Biotech and Pharma:
Compute Scalability@8x
It takes a lot of time to work manually, or to build and maintain bespoke systems
Collaboration@8x
Collaboration can be slow and painful within and between computational projects
Reproducibility@8x
It’s hard to consistently reproduce result data across different compute environments

CompBio & bioinformatics often needs manual processes & custom-built systems

Code Ocean installs into your existing cloud architectures and gets everyone onto the same page

    What our customers say

    Code Ocean's self-service capabilities make it easy for our scientists to do their work reproducibly. New users to the platform can get far with just a little support, giving our engineers time to focus on domain-specific challenges.

    DavidFeng-AIND

    Dr. David Feng
    Director of Scientific Computing, Allen Institute

    What our customers say

    Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results.

    BHK-PMCC

    Benjamin Haibe-Kains, Ph.D
    Senior Scientist, Princess Margaret Cancer Centre

    What our customers say

    Code Ocean sped up our internal image pre-processing computational workflow by at least 10x, improving collaboration and productivity between our global teams ... removing the need for painful cloud computing infrastructure set up.

    DimitrisPolychronopoulos-OchreBio

    Dimitris Polychronopoulos
    Director of In Silico Biology, Ochre Bio

    What our customers say

    Code Ocean opens the door to automating and scaling major aspects of the research process. With the Code Ocean platform, our scientists can focus on their core competencies, do more, think bigger, and achieve higher goals.

    YuvalKalugny-CytoReason

    Yuval Kalugny
    VP Engineering, CytoReason

    What our customers say

    The biggest win at Lantern is the pipeline we developed, and the value of Code Ocean was that it allowed the whole team to work together ... we had a shared environment for collaboration.

    PeterCarr-Lantern

    Peter Carr
    Principal Platform Architect, Lantern Pharma

    ml-models-announcement

    New: machine learning features

    We’re launching new features that make it easier for computational biologists, bioinformaticians, and ML engineers to work together in training, validating, and using ML models alongside their existing workflows.

    Built for Computational Science

    • Data analysis

      data-analysis
      Compute Scalability@8x

      Data analysis

      Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

    • Data management

      data-management
      Data Management Light@8x

      Data management

      Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

    • Bioinformatics pipelines

      bioinformatic-pipelines
      Pipelines Light@8x

      Bioinformatics pipelines

      Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

    • ML models

      AI-MLflow
      Data Analysis Light@8x

      ML model development

      Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

    • Multiomics

      multiomics
      Multiomics Light@8x

      Multiomics

      Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

    • Imaging

      image-processing
      Image processing Light@8x

      Imaging

      Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

    • Cloud management

      cloud-management
      Cloud management Light@8x

      Cloud management

      Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. 

    • Data/model provenance

      result-provenance
      Provenance Light@8x

      Data/model provenance

      Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

    data-analysis
    Compute Scalability@8x

    Data analysis

    Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

    data-management
    Data Management Light@8x

    Data management

    Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

    bioinformatic-pipelines
    Pipelines Light@8x

    Bioinformatics pipelines

    Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

    AI-MLflow
    Data Analysis Light@8x

    ML model development

    Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

    multiomics
    Multiomics Light@8x

    Multiomics

    Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

    image-processing
    Image processing Light@8x

    Imaging

    Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

    cloud-management
    Cloud management Light@8x

    Cloud management

    Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. 

    result-provenance
    Provenance Light@8x

    Data/model provenance

    Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

    Product features

    Accent image

    Who is Code Ocean For?