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Cloud-based computational science platform

Collaborative, reproducible bioinformatics for R&D

Code Ocean is a reproducible and traceable computational science platform for collaborative research in the cloud. Set up environments, provision compute, develop analysis with others, and scale bioinformatics pipelines.

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Trusted by thousands of computational scientists in Biotech and Pharma:
Compute Scalability@8x
It takes time to set up environments and provision cloud computing
Collaboration@8x
It can be difficult to work with others on the same computational projects
Reproducibility@8x
It’s hard to reproduce research in different environments, if at all

Bioinformatics often relies on manual, DIY processes

Code Ocean makes it easy for computational scientists to work in the cloud and collaborate with others

    What our customers say

    Code Ocean's self-service capabilities make it easy for our scientists to do their work reproducibly. New users to the platform can get far with just a little support, giving our engineers time to focus on domain-specific challenges.

    DavidFeng-AIND

    Dr. David Feng
    Director of Scientific Computing, Allen Institute

    What our customers say

    Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results.

    BHK-PMCC

    Benjamin Haibe-Kains, Ph.D
    Senior Scientist, Princess Margaret Cancer Centre

    What our customers say

    Code Ocean sped up our internal image pre-processing computational workflow by at least 10x, improving collaboration and productivity between our global teams ... removing the need for painful cloud computing infrastructure set up.

    DimitrisPolychronopoulos-OchreBio

    Dimitris Polychronopoulos
    Director of In Silico Biology, Ochre Bio

    What our customers say

    Code Ocean opens the door to automating and scaling major aspects of the research process. With the Code Ocean platform, our scientists can focus on their core competencies, do more, think bigger, and achieve higher goals.

    YuvalKalugny-CytoReason

    Yuval Kalugny
    VP Engineering, CytoReason

    What our customers say

    The biggest win at Lantern is the pipeline we developed, and the value of Code Ocean was that it allowed the whole team to work together ... we had a shared environment for collaboration.

    PeterCarr-Lantern

    Peter Carr
    Principal Platform Architect, Lantern Pharma

    Built for bioinformatics

    • Data analysis

      data-analysis-1

      Data analysis

      Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

    • Data management

      data-management

      Data management

      Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

    • Bioinformatics pipelines

      bioinformatic-pipelines

      Bioinformatics pipelines

      Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

    • AI & Machine Learning

      AI-MLflow

      AI and Machine Learning

      Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

    • Multiomics

      multiomics

      Multiomics

      Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

    • Image processing

      image-processing

      Image processing

      Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

    • Cloud management

      cloud-management

      Cloud management

      Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. 

    • Result provenance

      result-provenance

      Result provenance

      Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

    data-analysis-1

    Data analysis

    Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

    data-management

    Data management

    Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

    bioinformatic-pipelines

    Bioinformatics pipelines

    Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

    AI-MLflow

    AI and Machine Learning

    Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

    multiomics

    Multiomics

    Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

    image-processing

    Image processing

    Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

    cloud-management

    Cloud management

    Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. 

    result-provenance

    Result provenance

    Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

    Product features

    Capsules Colour@8x Capsules

    Package your code, data and environment in a single object.

    Capsules
    CapsulesGB
    Pipeline Colour@8x Pipelines

    Connect, automate, parallelize, and scale computational work.

    Pipelines
    Pipelines
    Data Colour@8x Data

    Manage all your Data assets in the cloud and  from multiple sources.

    Data
    DataGB
    Lineage Colour@8x Lineage Graph

    An immutable record of how your results are generated.

    Lineage Graph
    Lineage Graph
    Collections@8x Collections

    Gather and organize your work to make it visible and accessible.

    Collections
    Collections
    Apps Colour@8x Apps

    Use no-code bioinformatics apps, or build new ones from scratch.

    Apps
    Apps
    Admin@8x Admin

    A single pane of glass for your entire computational R&D cloud.

    Admin panel
    Admin
    API@8x API

    Programmatic access and control over all computational work.

    API
    API
    Accent image

    Who is Code Ocean For?

    IT & Engineering@8x-2 IT & Engineering

    Get computational teams up and running faster in the cloud, less dependent on IT and engineering resources, and using standardized computing environments across your organization.

    Learn more
    Computational Scientists@8x-2 Computational Scientists

    Code Ocean makes it easy for computational scientists and bioinformaticians to perform analysis, build pipelines, and reproduce their results in a secure cloud-based environment.

    Learn more
    R&D Leadership@8x-1 R&D Leadership

    Code Ocean creates an immutable, reproducible, and traceable scientific system of record. Prove what you discovered, when you discovered it, and how—without any additional work or platform lock-in.

    Learn more